PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g032580.1
Common NameLOC107009483
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 92aa    MW: 10362.7 Da    PI: 10.1071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g032580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.8e-0723591854
                      HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      +  ++L++llP+ + + +s K s + +L+++++YI++L
  Sopen02g032580.1 23 ELVSKLQQLLPEiR-NRRSSKASASKVLQETCNYIRNL 59
                      56689*******77.899999***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.518559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-82074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSS TGSSRISDDQ IIELVSKLQQ LLPEIRNRRS SKASASKVLQ ETCNYIRNLN  60
RQVDDLSDRL SQLLSTIDAD SPEAAIIRSL LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1612821e-155EU161282.1 Solanum pennellii transcription factor style2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234290.13e-57transcription factor style2.1
RefseqXP_006338463.13e-57PREDICTED: transcription factor PRE1-like
RefseqXP_015064311.13e-57PREDICTED: transcription factor PRE1-like
RefseqXP_016561417.13e-57PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX17e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLB6CG443e-57B6CG44_SOLLC; Transcription factor style2.1
TrEMBLB6CG453e-57B6CG45_SOLPN; Transcription factor style2.1
TrEMBLM0ZLZ03e-57M0ZLZ0_SOLTU; Uncharacterized protein
STRINGSolyc02g087860.2.11e-56(Solanum lycopersicum)
STRINGPGSC0003DMT4000035871e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.14e-21bHLH family protein